In this area, I have been working in two lines: Modelling of cyanobacteria cultures and construction of phylogenies from metabolic networks.
- D. Gammerman, A. Montagud, J.A. Conejero, J.F. Urchueguía, and P. Fernández de Córdoba. New approach for phylogenetic tree recovery based on genome-scale metabolic networks. J. Comput. Biol. 21 (2014), no. 7, 508-519. doi:10.1089/cmb.2013.0150
- D. Fuente, J. Keller, J.A. Conejero, M. Rögner, S. Rexroth, and J.F. Urchueguía. Light distribution and spectral composition within cultures of micro-algae: Quantitative modelling of the light field in photobioreactors. Algal Research, 23, 266-177 (2017).
- D. Fuente, C. Lizama, J.F. Urchueguía, and J.A. Conejero. Estimation of the light field inside photosynthetic microorganism cultures through Mittag-Leffler functions at depleted light conditions. J. Quant. Spectrosc. Radiat. Transfer, 204, 23-26 (2018). doi:10.1016/j.jqsrt.2017.08.012
- P. Linbald et al. CyanoFactory, a European consortium to develop technologies needed to advance cyanobacteria as photoautotrophic production chassis. Algal Res. 41,101510 (2019). doi:10.1016/j.algal.2019.101510
- D. Gammerman, A. Montagud, J.A. Conejero, J.F. Urchueguía, and P. Fernández de Córdoba. Large scale evaluation of differences between network-based and pairwise sequence-alignment-based methods of dendrogram reconstruction. PLoS ONE 14(9): e0221631 (2019). doi:10.1371/journal.pone.0221631
- D. Fuente, Ó. Garibo, J.A. Conejero, and J.F. Urchueguía. Rational design of a genetic finite state machine: combining biology, engineering, and mathematics for biocomputing. Mathematics, 8(8), 1362 (2020). doi:10.3390/math8081362
- L. Goiriz, R. Ruiz, Ò. Garibo-I-Orts, J.A. Conejero, and G. Rodrigo. A variant-dependent molecular clock with anomalous diffusion models SARS-CoV-2 evolution in humans. Proc. Natl. Acad. Sci. USA. 2023 120(30) e2303578120 (2023). doi:10.1073/pnas.2303578120
